Professor Dr Dr Thomas Lengauer

Vice President of the Leopoldina

  • Section Informatics
  • Location Saarbrücken, Germany
  • Election year 2003

Research

Research Priorities: Bioinformatics, viral resistance analysis, analysis of epigenomic data, protein-ligand interaction
Thomas Lengauer is a German computer scientist and bioinformatics researcher. In the early stages of his career, he focused on theoretical computer science and discrete optimisation methods for circuit design. Afterwards, he switched to bioinformatics. He developed algorithmic methods for precisely predicting viral resistance mutations (such as in the HI virus), protein-ligand interactions, and epigenomic signatures. His work combines algorithm design, machine learning, and clinical data analysis and provides robust freely available tools for the life sciences.
One of Thomas Lengauer’s most remarkable achievements is the resistance analysis which he initiated for HIV. The “geno2pheno” web tool links sequencing data with machine learning and provides probabilities for the effectiveness of anti-retroviral compounds. 
In the field of structural and drug bioinformatics, the lab of Thomas Lengauer created algorithms for protein folding and protein-ligand docking, including what is known as the FlexX approach. 
A further research priority Thomas Lengauer was the integrative analysis of epigenomic data. The bioconductor framework RnBeads, in which the lab of Thomas Lengauer was heavily involved, combines DNA methylation, histone, and transcriptome data in order to map functional chromatin states.
The methods developed by Thomas Lengauer and his team are widely used in personalised medicine, pharmaceutical research, and molecular diagnostics.

  • since 2019 Honorary Professor, University of Cologne, Cologne, Germany
  • since 2018 Emeritus Member, Max Planck Institute for Informatics, Saarbrücken, Germany
  • since 2003 Honorary Professor, University of Bonn, Bonn, Germany
  • since 2001 Honorary Professor, Saarland University, Saarbrücken, Germany
  • 2001-2018 Director, Max Planck Institute for Informatics, Saarbrücken, Germany
  • 1992-2001 Professor of Computer Science, University of Bonn, Bonn, Germany
  • 1992-2001 Director, Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Sankt Augustin, Germany
  • 1984-1992 Professor of Computer Science, University of Paderborn, Paderborn, Germany
  • 1984 Habilitation in Computer Science, Saarland University, Saarbrücken, Germany
  • 1981-1984 Research Associate, Subject of Computer Science, Saarland University, Saarbrücken, Germany
  • 1979-1981 Member of Technical Staff, Bell Laboratories, Murray Hill, USA
  • 1979 PhD in Computer Science, Stanford University, Stanford, USA
  • 1975-1979 Doctoral Studies, Stanford University, Stanford, USA
  • 1977 MSc in Computer Science, Stanford University, Stanford, USA
  • 1976 PhD in Mathematics, Freie Universität (FU) Berlin, Berlin, Germany
  • 1975 Diploma in Mathematics, FU Berlin, Berlin, Germany
  • 1971-1975 Degree in Mathematics, FU Berlin, Berlin, Germany
  • 1970-1975 Student Research Assistant, Hahn Meitner Institute for Nuclear Research, Berlin, Germany

  • since 2026 Member, Kommission zur Überprüfung der sicherheitsrelevanten Wirtschaftsbeziehungen zwischen Deutschland und China ("China Commission") of the German Bundestag
  • since 2025 Vice President, German National Academy of Sciences Leopoldina, Germany
  • since 2021 Co-Editor in Chief, Bioinformatics Advances (published by Oxford University Press and International Society for Computational Biology)
  • since 2021 Co-Speaker, Joint Committee on the Handling of Security-Relevant Research, DFG and German National Academy of Sciences Leopoldina, Germany
  • since 2018 Chair, Scientific Advisory Board, Bonn-Aachen International Center for Information Technology, Bonn, Germany
  • 2018-2021 President, International Society for Computational Biology
  • 2015-2025 Member, Presidium, German National Academy of Sciences Leopoldina, Germany
  • 2013-2025 Member, Scientific Commission, Einstein Foundation, Berlin, Germany
  • 2014-2016 Vice-President, International Society for Computational Biology
  • 2011-2013
  • 2006-2015 Member, Senate, German National Academy of Sciences Leopoldina, Germany
  • 2005-2026 Member, Board of Directors, International Society for Computational Biology
  • 2005-2012 Member, Board of Trustees, Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Sankt Augustin, Germany
  • 2005-2009 Member, Foundation Council, Beilstein Foundation, Frankfurt am Main, Germany
  • since 2004 Member, Scientific Advisory Board, Bonn-Aachen International Center for Information Technology, Bonn, Germany
  • 2004-2009 Member, Scientific Advisory Board, Swiss Institute for Bioinformatics, Lausanne, Switzerland
  • 2004-2007 Chairperson, Scientific Advisory Board, Swiss Institute for Bioinformatics, Switzerland
  • 2002-2011 Member, Board of Trustees, Heinz Nixdorf Institute, University of Paderborn, Paderborn, Germany
  • 1999-2006 Member, Scientific Advisory Board, Project “Genome Analysis of the Plant Biological System (GABI)”, BMBF, Germany
  • 1999-2000 Vice-President, International Society for Computational Biology
  • 1997-2002 Founding Member, Board of Directors, International Society for Computational Biology
  • 1995-2010 Co-Founder and Member, Steering Committee, Conference Series “RECOMB Research in Computational Molecular Biology”, Cambridge, USA
  • 1994-1995 Vice-President, German Informatics Society, Bonn, Germany
  • 1993-2013 Member, Expert Committee “Bioinformatics”, DECHEMA Gesellschaft für Chemische Technik und Biotechnologie, Frankfurt am Main, Germany
  • 1991-1995 Member, Presidium, German Informatics Society, Bonn, Germany

  • 2012-2016 Partner and Data Analysis Coordinator, German Epigenome Programme (DEEP), Federal Ministry of Education and Research (BMBF), Germany
  • 2011-2016 Partner, Project “A BLUEPRINT of Haematopoietic Epigenomes”, 7th FP, EU
  • 2008-2011 Coordinator, Project “Patient- and Drug-specific Models for HIV Cell Entry”, BMBF, Germany
  • 2005-2008 Memory, Management Board, EuResist Network, Rome, Italy
  • 2005-2010 Partner, Clinical Research Unit (FOR) 129 “Mechanisms for Development of Resistance and Optimisation of Antiviral Strategies of Hepatitis C Virus Infection Comprising Integrative Biomathematical and Bioinformatical Models”, German Research Foundation (DFG), Germany
  • 2004-2009 Partner, Network of Excellence “A European Network for Integrated Genome Annotation” (BIOSAPIENS), 6th FP, EU
  • 2000-2003 Coordinator, Helmholtz Network for Bioinformatics, BMBF, Germany
  • 1998-2005 Spokesperson, Priority Programme (PP) 1063 “Computer science methods for analysing and interpreting large quantities of genomic data”, DFG, Germany
  • 1995-2000 Spokesperson, PP 731 “Efficient algorithms for discrete problems and their applications”, DFG, Germany
  • 1995-2000 Partner, Collaborative Research Centre (CRC) 408 “Inorganic solids without translational symmetry – synthesis, structure, and modelling”, DFG, Germany
  • 1993-1997 Scientific Co-Coordinator, Strategic Initiative “Molecular Computer Science”, BMBF, Germany
  • 1992-1995 Partner, Research Unit “Efficient use of massive parallel systems”, DFG, Germany
  • 1987-1990 Member, Board of Directors, “cadlab” cooperation, University of Paderborn and Nixdorf Computer AG, Paderborn, Germany
  • 1983-1984 Partner, CRC “VLSI and Parallelism”, DFG, Germany

  • 2021  Fellow, Association for Computing Machinery, New York City, USA
  • 2015  Fellow, International Society for Computational Biology
  • 2014  Hector Science Award, Hector Foundation II, Weinheim, Germany
  • 2011  Heinz Ansmann Award for AIDS Research (together with Rolf Kaiser and Marc Oette), Heinz Ansmann Foundation, Düsseldorf, Germany
  • since 2010  Member, Academia Europaea
  • since 2007  Member, acatech – German Academy of Science and Engineering, Germany
  • since 2003  Member, German National Academy of Sciences Leopoldina, Germany
  • 2003  Karl Heinz Beckurts Award, Karl Heinz Beckurts Foundation, Zeuthen, Germany
  • 2003  Konrad Zuse Medal, German Informatics Society, Bonn, Germany
  • 1972-1977 Member, Studienstiftung des deutschen Volkes (German Academic Scholarship Foundation), Germany

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